search

Yandell-Lab / VVP-pub

VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
19 stars 9 forks source link

gnomAD vvp non-existant + vcf gives segmentation error #12

Open Bradshard opened 7 months ago

Bradshard commented 7 months ago

Since there is no gnomAD vvp build anymore I tried to run the example build (which works in the example provided), it gives segmentation error in my own vcf file which I formatted as it is in the example. What should I do to fix this problem.

barrymoore commented 7 months ago

Hi @Bradshard,

Are you able to share a small fragment of VCF file that recreates the segmentation fault that you are seeing?

Barry

Bradshard commented 6 months ago

okay I passed the error, I do know why I am not getting result. It is because 1kg background has chromosome 7. However I need chromosome 2. But the gnomAD chromosome 2 background is huge and my computer freezes when I use it.

Is there a possibility to solve it differently?