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Yandell-Lab / maker

Genome Annotation Pipeline
http://yandell-lab.org/software/maker.html
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repeatmasker_masker_master_datastore_index.log file Chromosome1 FAILED #21

Open huaixiaolu opened 1 month ago

huaixiaolu commented 1 month ago

Hello,

I am using the software MAKER, and there are no error messages; everything seems to be running normally. However, in the file repeatmasker_masker_master_datastore_index.log, it shows "FAILED" for some entries, like this:

Chromosome1    anliu_repeatmasker_masker_datastore/40/1C/Chromosome1/    STARTED
Chromosome1    anliu_repeatmasker_masker_datastore/40/1C/Chromosome1/    FAILED

Currently, I have only completed one chromosome, but it has already failed. I checked the log files, and there are no errors, but at the final step for each chromosome, both RANK and COUNT show "DIED":

repeatmasker_masker.maker.output/anliu_repeatmasker_masker_datastore/40/1C/Chromosome1/theVoid.Chromosome1/Chromosome1.abinit_masked.0.anlvliuying.augustus
DIED    RANK    0:4:0:0
DIED    COUNT    1
DIED    RANK    0
DIED    COUNT    1

Additionally, the parallel run results in empty evidence_*.gff.ann files. Could this be due to insufficient or unqualified evidence data? How can I resolve this issue? image image image

Thank you!

carsonhh commented 1 week ago

Sorry of the slow reply. You will need to capture and post the STDERR of a failed run. That will include the message attached to each failure.