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Yandell-Lab / taxonomer_0.5

full taxonomer cython repository
MIT License
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What`s the meaning of each tabs? #2

Closed yeli7068 closed 8 years ago

yeli7068 commented 8 years ago

Hi,

Thanks for your works. I tried taxonomer locally and I found the results from classify_reads.py were hard to understand.

Here is one of the results:

C KFALO:00070:01728 32 33 32 1 5535.943359 2928.200439 1434

Could you please tell me how to understand the results?

4ureliek commented 8 years ago

Hi, The tabs are as follow: <classified/unclassified> <read_ID> <tax_ID> <seq_ID> <depth> <number_of_hits_with_equal_score> <max_score> <average_score> <read_length>

seq_ID is not reliable if the column "number_of_hits_with_equal_score" is more than 1.

The tax_ID and seq_ID are the ones from the .tri and .sti file

Cheers