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Yandell-Lab / taxonomer_0.5

full taxonomer cython repository
MIT License
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what`s the meaning of --tax_cutoff and --kmer_cutoff #4

Closed wangzhenkeep closed 7 years ago

4ureliek commented 7 years ago

--tax_cutoff is the maximum number of taxIDs that can share a kmer. It would be mostly important for a database with very conserved sequences. --kmer_cutoff is the maximum number a particular kmer is allowed to be seen