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Yang-J-LIN / lncLocator2

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Use FASTA file as input #3

Open almiheenko opened 2 years ago

almiheenko commented 2 years ago

Hi Yang,

Thank you for this great tool! We are interested in predicting the subcellular localization for thousands of PacBio reads targeting lncRNAs. I tried to use http://www.csbio.sjtu.edu.cn/bioinf/lncLocator/ and it works well for one read sequence but is inapplicable for analysis of the whole dataset. Could you help me to run lncLocator2 locally? How can I use a FASTA file as an input?

Thank you!

Alla

Yang-J-LIN commented 2 years ago

Hi Alla,

Thanks for your interest in lncLocator 2. The codes in this repository are used for the reproduction of the program, including training and test. I will try to sort out a standalone version of lncLocator 2. Before that, I suggest you try to use the lncLocator 2 server, where you can upload a fasta file with no more than 10 sequences.

Best

Yang

almiheenko commented 2 years ago

Having a standalone version would be amazing. We have a lot of reads, so unfortunately it is impossible to analyze all of them through the website.

shubhamc-iiitd commented 6 months ago

Hey Yang! Is there any update on the standalone? I want to use your tool and I have more than 300 sequences. Could you give me a workaround?