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YangLab / CIRCexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
http://yanglab.github.io/CIRCexplorer
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problems happened in CIRCexplorer #1

Closed deuterisan closed 9 years ago

deuterisan commented 9 years ago

Hi, When I run the CIRCexplorer at last step using standard parameters, sth wrong happened, how could it happen? thanks!

Start to convert fustion reads... Converted 30234 fusion reads! Start to annotate fusion junctions... Traceback (most recent call last): File "/home/program/bin/CIRCexplorer.py", line 371, in annotate_fusion(ref_f, temp1, temp2) File "/home/program/bin/CIRCexplorer.py", line 53, in annotate_fusion gene, isoform = parse_ref1(ref_f) File "/home/program/bin/CIRCexplorer.py", line 166, in parse_ref1 ends = list(map(int, line.split()[10].split(',')[:-1])) IndexError: list index out of range

I've solved it! This issue happened probabilistically and it was the error coming from server, not from the script. Hope this answer could help anyone else.

kepbod commented 9 years ago

Could you tell me which lab you come from? Thanks a lot!