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YangLab / CIRCexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
http://yanglab.github.io/CIRCexplorer
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ValueError: need more than 2 values to unpack #15

Closed snehamurthy21 closed 7 years ago

snehamurthy21 commented 7 years ago

Start CIRCexplorer 1.1.10 Start to convert fustion reads... Converted 0 fusion reads! Start to annotate fusion junctions... Traceback (most recent call last): File "/usr/local/bin/CIRCexplorer.py", line 9, in load_entry_point('CIRCexplorer==1.1.10', 'console_scripts', 'CIRCexplorer.py')() File "build/bdist.linux-x86_64/egg/circ/CIRCexplorer.py", line 508, in main

File "build/bdist.linux-x86_64/egg/circ/CIRCexplorer.py", line 68, in annotate_fusion

File "build/bdist.linux-x86_64/egg/circ/CIRCexplorer.py", line 209, in parse_ref1

ValueError: need more than 2 values to unpack

could someone pls tell me why i am getting 0 fusion reads converted and value error

kepbod commented 7 years ago

Please make sure your ref.txt file is in correct format. See example.

snehamurthy21 commented 7 years ago

yes i used the tools script to generate ref.txt i still get 0 fusion reads the value error was solved thank you

kepbod commented 7 years ago

I think it is the problem of your datasets.