YangLab / CIRCexplorer

A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
http://yanglab.github.io/CIRCexplorer
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error when hisat2 mapping sort bam file #19

Open hust-yyan opened 3 years ago

hust-yyan commented 3 years ago

hi when i run circexplorer3 in raw fastq file, I encountered the following error image and this is my running code: ~/.conda/envs/yyan3.7/bin/clear_quant -1 $b1 -2 $b2 -g $ref \ -i $hisat -j $hisat -G $gtf -o /data1/yyan_tmp/LUNG_CANCER/analysis/CircRNA/CLEAR_output thanks!