kepbod
commented
6 years ago This is an issue of tophat2 but not CIRCexplorer2. Maybe you could try to reinstall tophat2.
Closed weishuxun closed 6 years ago
kepbod
commented
6 years ago This is an issue of tophat2 but not CIRCexplorer2. Maybe you could try to reinstall tophat2.
when the align of CIRCexplorer2 was used with a command of
tophat2 --library-type fr-unstranded -o tophat_fusion -p 46 --fusion-search --keep-fasta-order --bowtie1 --no-coverage-search bowtie1_index SRR1797218_1.fastq SRR1797218_2.fastq，a error was run and show： Error running bowtie: Error while flushing and closing output terminate called after throwing an instance of 'int'。 is there a problem with version of my software or other matter？ could you help me？