Closed nedoluzhko closed 5 years ago
Dear colleagues!
I try to use unmapped reads after mapping using Tophat2. There is some problem with launching CIRCexplorer2 align:
CIRCexplorer2 align -G drerio.gtf -g drerio.fa -i drerio -f unmapped_66.fq > CIRCexplorer2_align.log
The program said that something wrong:
Usage: CIRCexplorer2 align [options] -G GTF (-g GENOME | -i INDEX1 -j INDEX2 | -i INDEX1 | -j INDEX1) -f FQ
Could you help me?
Yours, Artem
Dear colleagues!
I try to use unmapped reads after mapping using Tophat2. There is some problem with launching CIRCexplorer2 align:
CIRCexplorer2 align -G drerio.gtf -g drerio.fa -i drerio -f unmapped_66.fq > CIRCexplorer2_align.log
The program said that something wrong:
Usage: CIRCexplorer2 align [options] -G GTF (-g GENOME | -i INDEX1 -j INDEX2 | -i INDEX1 | -j INDEX1) -f FQ
Could you help me?
Yours, Artem