CIRCexplorer2 annotate doesn't support multiple rows command

YangLab / CIRCexplorer2

circular RNA analysis toolset

http://circexplorer2.readthedocs.org/

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CIRCexplorer2 annotate doesn't support multiple rows command #5

Closed gnilihzeux closed 7 years ago

gnilihzeux commented 7 years ago

Actually I find CIRCexplorer2 annotate seems not support linux continue operater \ just as below:

CIRCexplorer2 annotate -r ~/hg38_ens.txt \
-g ~/ensembl_grch38.fa \
~/circ_out \
> CIRCexplorer2_annotate.log

Even just one . I wish this could be solved because of the ugly format of full path. Maybe mine is an exception.

kepbod commented 7 years ago

CIRCexplorer2 uses docopt to parse commands, and shell command in one line is the most convenient way. I think this requested feature is not necessary.