What is hg19_ref_all.txt file?

YangLab / CIRCexplorer2

circular RNA analysis toolset

http://circexplorer2.readthedocs.org/

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What is hg19_ref_all.txt file? #62

Closed mathavanpu closed 3 months ago

mathavanpu commented 1 year ago

Hi The annotate step need this file hg19_ref_all.txt, I want to know is that file representing the human GTF file? or how I can generate the file (hg19_ref_all.txt)

davhum commented 1 year ago

Hi Mathavanpu,

If am not sure where you identify a file called "hg19_ref_all.txt", can you let me know? The annotation steps are documented in vignette (or via https://github.com/VCCRI/Sierra/wiki/Sierra-Vignette) and do utilise a gtf file .

erdaqorri commented 4 months ago

@mathavanpu Hi, were you able to figure out how to generate this file "hg19_ref_all.txt"?

kepbod commented 3 months ago

Please refer to the CIRCexplorer2 manual.