Mitochondrial circRNAs with CIRCexploere2

YangLab / CIRCexplorer2

circular RNA analysis toolset

http://circexplorer2.readthedocs.org/

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Mitochondrial circRNAs with CIRCexploere2 #67

Open BirongZhang opened 1 year ago

BirongZhang commented 1 year ago

Hey,

Thanks for sharing this amazing tool!

I found that chrMT appears in the .bed and .junction files, but not in the final counts table. I was wondering if there is any way to help me generate a circRNA counts table with mitochondrial circRNAs.

Any advice would be highly appreciated. Thanks.

Kind regards, Birong

kepbod commented 1 year ago

We did not set filters on the name of chromosomes. Theoretically, if your gene annotations contain mitochondrial genes, it can report mitochondrial circRNAs.