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YangLab / CIRCexplorer2

circular RNA analysis toolset
http://circexplorer2.readthedocs.org/
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IndexError: list index out of range. #70

Open jaberdehghani64 opened 10 months ago

jaberdehghani64 commented 10 months ago

I have got "IndexError: list index out of range" error when I run CIRCexplorer2. I used "fast_circ.py parse -r '/home/jaber/Desktop/volox/ncbi_dataset/data/GCA_000143455.1/genepred.txt' -g '/home/jaber/Desktop/volox/ncbi_dataset/data/GCA_000143455.1/GCA_000143455.1_v1.0_genomic.fna' -t TopHat-Fusion -o '/home/jaber/Desktop/volox/fast_circ' '/home/jaber/Desktop/volox/tophat2/accepted_hits.bam' " command. Does anyone know what is the problem by any chance? Thanks

kepbod commented 10 months ago

Please make sure /home/jaber/Desktop/volox/tophat2/accepted_hits.bam is the BAM file produced by TopHat-Fusion.

jaberdehghani64 commented 10 months ago

Please make sure /home/jaber/Desktop/volox/tophat2/accepted_hits.bam is the BAM file produced by TopHat-Fusion.

Thank you for your response. Yes, it is a "bam" file made by TopHat-Fusion.