Open Leroy-Xiong opened 1 month ago
Hi,
in the function STitch3D.utils.align_spots(), the input AnnData objects are required to contain spatial locations in the attribute .obsm['spatial']. Please make sure the ST AnnData objects are read correctly, or you can manually set .obsm['spatial'] to be the Nx2 spatial coordinates of spots.
Best, Gefei
Hello!
I encountered the following error when I ran example 4:
May I ask if you know what caused it?
I printed the
adata_st_list[0]
:Thank you!