YangLabHKUST / STitch3D

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
https://stitch3d-tutorial.readthedocs.io/en/latest/index.html#
MIT License
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slicestable.tsv,genes_new.txt,barcode_level_layer_map.tsv #32

Open yxmsir opened 1 month ago

yxmsir commented 1 month ago

Dear professor: The work here is highly valuable. I want to replicate the workflow according to the examples, but I can't find several important files. They are "./data/molecular-atlas-master/data/slicestable.tsv" in Example 1, "./genes_new.txt" in Example 2, and "./data/spatialLIBD/barcode_level_layer_map.tsv" in Example 4. Could you tell me where I can download them?

gefeiwang commented 1 month ago

Hi,

you can get the files following the instruction: https://github.com/YangLabHKUST/STitch3D/issues/1 https://github.com/YangLabHKUST/STitch3D/issues/5 https://github.com/YangLabHKUST/STitch3D/issues/23#issuecomment-1987879480

yxmsir commented 1 month ago

Thank you very much for your assistance.