YangLabHKUST / STitch3D

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices

https://stitch3d-tutorial.readthedocs.io/en/latest/index.html#

MIT License

52 stars 2 forks source link

Cannot find CCFv3 dataset #33

Open lightoorange opened 1 month ago

lightoorange commented 1 month ago

Dear Professor, I want to know where I can find this file when I try this great STitch3D.

3D coordinates and model are based on CCFv3.

load("spotstable.RData") load("VOLUMESMALL.RData") load("VOLUME.RData") in this part, "Run STitch3D on the adult mouse brain dataset" I know this issue has been discussed in #14, but I am experiencing the same problem and am unsure how to modify the paths path.bin and path.matrices to the corresponding folders to obtain the data I need.

Thank you so much!

gefeiwang commented 1 month ago

Hi there,

path.bin refers to the path to the folder on your computer containing scripts in https://github.com/cantin-ortiz/molecular-atlas/tree/a409706716520a29471882c535b618a28d6a2b0c/bin. 'path.matrices' refers to the folder containing atlasspots.RData and vivid-colors.RData, which can be found in https://github.com/cantin-ortiz/molecular-atlas.