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YangLabHKUST / STitch3D

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
https://stitch3d-tutorial.readthedocs.io/en/latest/index.html#
MIT License
52 stars 2 forks source link

Cannot import the STitch3D package, how to solve this problem? #4

Closed cristalliao closed 1 year ago

cristalliao commented 1 year ago

Dear Professor, I really like this STitch3D package and want to run this package on my computer. And I have already followed the tutorials you provided to import the STitch3D package git clone https://github.com/YangLabHKUST/STitch3D.git cd STitch3D conda env update --f environment.yml conda activate stitch3d However, when I import this STitch3D package, it gives me some errors, which are

import-im6.q16: unable to open X server `' @ error/import.c/ImportImageCommand/346.

How to deal with this issue? Thanks in advance! Very appreciated!

gefeiwang commented 1 year ago

Hi there,

This error seems to be caused by running a bash script instead of a python script. You can try suggestions in this page to solve it.

Best, Gefei

cristalliao commented 1 year ago

Dear Gefei,

Thanks for your advice! My problem has been solved!

Best regards, Cristal