How can I find the file "slicestable.tsv"?

YangLabHKUST / STitch3D

Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices

https://stitch3d-tutorial.readthedocs.io/en/latest/index.html#

MIT License

52 stars 2 forks source link

How can I find the file "slicestable.tsv"? #5

Closed cristalliao closed 1 year ago

cristalliao commented 1 year ago

Dear Professor, I want to know where I can find this file "slicestable.tsv" when I try this great STitch3D. meta_slice = pd.read_csv("./data/molecular-atlas-master/data/slicestable.tsv", index_col=0, sep="\t") in this part "Run STitch3D on the adult mouse brain dataset". Thanks in advance!

gefeiwang commented 1 year ago

Hi Cristal,

"slicestable.tsv" is publicly available at the repository https://github.com/cantin-ortiz/molecular-atlas. You need to download the data files through https://www.molecularatlas.org/data-to-download/intermediary_data/figures.zip and rename the unzipped folder as "data".

cristalliao commented 1 year ago

Thanks a lot!