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YangLabHKUST / SpatialScope

A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
https://spatialscope-tutorial.readthedocs.io/en/latest/
GNU General Public License v3.0
50 stars 6 forks source link

Failed to read dashboard log: [Errno 2] No such file or directory: '/tmp/ray/session_2024-01-12_10-40-45_726841_46882/logs/dashboard.log' #5

Open ReaganGen opened 8 months ago

ReaganGen commented 8 months ago

Hi, thanks for the great work! I have installed the tool according to the instruction from the Installation part successfully

Screenshot 2024-01-12 at 10 42 16 AM

But when I tried to check the installation status, I always got the following error

Screenshot 2024-01-12 at 10 44 33 AM

Is there any method to solve this? Thank you so much!

JiaShun-Xiao commented 8 months ago

Hi, thanks for the great work! I have installed the tool according to the instruction from the Installation part successfully Screenshot 2024-01-12 at 10 42 16 AM

But when I tried to check the installation status, I always got the following error Screenshot 2024-01-12 at 10 44 33 AM

Is there any method to solve this? Thank you so much!

Hi,

It seems that the default tmp dir '/tmp/ray' has some conflicts in your system, you can try assign a different tmp dir in 'ray.init(num_cpus=num_cpus-2,_temp_dir='/tmp/ray')' of Cell_Type_Identification.py. By the way, we have provided a docker image (docker pull xiaojs95/spatialscope) to avoid installation problems. See the the project homepage for more details. Thanks,

Jiashun