KeyError of step 3

[ChenJin2020]

Hi,

Thanks for the nice tool. I encountered a key error when running the step 3 with the demo data (10x Visium human heart data). Here is the error:

python ./src/Decomposition.py --tissue heart --out_dir ./output --SC_Data ./Ckpts_scRefs/Heart_D2/Ref_Heart_sanger_D2.h5ad --cell_class_column cell_type --ckpt_path ./Ckpts_scRefs/Heart_D2/model_5000.pt --spot_range 0,100 --gpu 0,1,2,3

2024-01-18 17:20:57,374 : INFO : load scRNA-seq reference: ./Ckpts_scRefs/Heart_D2/Ref_Heart_sanger_D2.h5ad 2024-01-18 17:20:58,700 : INFO : scRNA-seq reference data shape: (17369, 2195) 2024-01-18 17:20:58,700 : INFO : scRNA-seq reference cell class number: 10 2024-01-18 17:20:58,799 : INFO : load checkpoint: ./Ckpts_scRefs/Heart_D2/model_5000.pt Traceback (most recent call last): File "/SpatialScope/./src/Decomposition.py", line 445, in DECOM.decomposition() File "/SpatialScope/./src/Decomposition.py", line 363, in decomposition self.LoadModel() File "/SpatialScope/./src/Decomposition.py", line 89, in LoadModel model_single = SCGradNN(input_dim1 = self.data.shape[1], down_block_dim=states['down_block_dim'], factors = states['factors']).to(self.config.device) KeyError: 'factors'

Could you please let me know how to fix the issue.

Thanks,

Chen

[JiaShun-Xiao]

Hi, thank you for reporting this bug, we have fixed it, please use git pull to update the repository. By the way, we provide a docker image (docker pull xiaojs95/spatialscope) to avoid installation problems. See the github homepage for more details. Thanks, Jiashun

[JiaShun-Xiao]

the bug has been fixed

[ChenJin2020]

Hi, thank you for reporting this bug, we have fixed it, please use git pull to update the repository. By the way, we provide a docker image (docker pull xiaojs95/spatialscope) to avoid installation problems. See the github homepage for more details. Thanks, Jiashun

Thank you for fixing the issue and providing the docker image.