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Yelab2020 / Cottrazm

Construct Tumor Transition Zone Microenvironment
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a warning about FeatureEnrichment function #5

Open JihyunKiminGithub opened 1 year ago

JihyunKiminGithub commented 1 year ago

Dear developers, First of all, thanks for developing this useful packages.

I have a question about one of your function. The error said there is no gene mapped and I think this is awkard. When I see the DiffGenes, I have a lot of significant genes. Can you please check your enrichment function again?

Many thanks, Jihyun

boundary_enrich <-

  • FeatureEnrichment(
  • DiffGenes = DiffGenes,
  • cut_off_pvalue = 0.05,
  • cut_off_logFC = 0.2,
  • Location = "Mal"
  • ) 'select()' returned 1:many mapping between keys and columns --> No gene can be mapped.... --> Expected input gene ID: --> return NULL... 경고메시지(들): Problem while computing KEGG = purrr::map(...). :정보_소스: 1.53% of input gene IDs are fail to map...