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YeoLab / FLARE

RNA edit detection (SAILOR) and peak calling (FLARE)
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FDR in final peak calling output #2

Open skchronicles opened 1 year ago

skchronicles commented 1 year ago

Hello there,

I hope all is going well on your side, and that you are having a great day!

I stumbled across your pipeline FLARE while encountering an issue with SAILOR. In the issue, it mentioned using this pipeline as SAILOR was no longer being developed. That you for creating and maintaining this awesome pipeline! I was able to successfully run the pipeline with my dataset 🚀 , and I have a quick question.

Would it be possible to retain the FDR or adjusted p-value in FLARE's final output? I ran the FLARE peak calling pipeline with the option, "fdr_threshold": 1.0, hoping that I could take the final output and filter it later.

There is no rush. I am just hoping it could be added in a later release of the tool or whenever you have some time. Thank you again for creating this awesome tool. I found it extremely useful!

Best Regards, @skchronicles

ekofman commented 5 months ago

Hi @skchronicles I'm so sorry I somehow missed your message! I don't know how it slipped by for me... I can enable this. Are you still actively using FLARE/ would this be useful to you still?