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YeoLab / clipper

A tool to identify CLIP-seq peaks
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Benign warnings when running CLIPper #30

Open warif2 opened 8 years ago

warif2 commented 8 years ago

When running CLIPper I was getting a couple of deprecation warnings which I have pasted below. I emailed Michael regarding this and found out that these are just benign warnings which will not affect the analysis

WARNING:py.warnings:/usr/local/lib/python2.7/dist-packages/clipper-0.2.0-py2.7-linux-x86_64.egg/clipper/src/peakfinder.py:446: FutureWarning: sort(columns=....) is deprecated, use sort_values(by=.....) df = df.sort("final_p_value")

WARNING:py.warnings:/usr/local/lib/python2.7/dist-packages/clipper-0.2.0-py2.7-linux-x86_64.egg/clipper/src/peakfinder.py:449: FutureWarning: sort(columns=....) is deprecated, use sort_values(by=.....) df['padj'] = df.sort("final_p_value", ascending=False).bh_corrected.cummin()

WARNING:py.warnings:/usr/local/lib/python2.7/dist-packages/clipper-0.2.0-py2.7-linux-x86_64.egg/clipper/src/peakfinder.py:450: FutureWarning: sort(....) is deprecated, use sort_index(.....) return df.sort().

lufeng891109 commented 6 years ago

Hi, have you solved the problem? Why it has the warnings?