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YeoLab / clipper

A tool to identify CLIP-seq peaks
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CLIPper fails with no quality scores #33

Open mlovci opened 8 years ago

mlovci commented 8 years ago

Clipper fails ungracefully when .bam files don't have quality scores.

gpratt commented 8 years ago

Sorry for the late reply. Have you had any luck hacking in quality scores into your bam file? I think that would be the best way around this issue.

Gabriel Pratt Bioinformatics Graduate Student, Yeo Lab University of California San Diego

On Fri, Aug 19, 2016 at 8:38 AM, Shan Sabri notifications@github.com wrote:

I'm having the same issue. Any thoughts?

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ShanSabri commented 8 years ago

Yes. If I impute quality scores, then clipper runs successfully.