Or, run the workflow using cwl in its native context:
cwltool wf_get_peaks_pe_scatter.cwl paired_end_clip.yaml
cwltool wf_get_peaks_se_scatter.cwl single_end_clip.yaml
There is no such file as wf_get_peaks_pe_scatter.cwl. If I change it to wf_get_peaks_scatter_pe.cwl with the full path I still get errors.
The Readme says:
Or, run the workflow using cwl in its native context: cwltool wf_get_peaks_pe_scatter.cwl paired_end_clip.yaml cwltool wf_get_peaks_se_scatter.cwl single_end_clip.yaml
There is no such file as wf_get_peaks_pe_scatter.cwl. If I change it to wf_get_peaks_scatter_pe.cwl with the full path I still get errors.
Could not load extension schema http://schema.org/docs/schema_org_rdfa.html: ('http://schema.org/docs/schema_org_rdfa.html', InvalidCodepoint("Codepoint U+002E at position 3 of u'ma.org' not allowed",)) ...
Belinda