Closed nikou123456 closed 1 year ago
You can use CSI NGS Portal to run eCLIP-Seq pipeline.
The same request with Jessica, the link of CSI NGS Portal is not openable. And I tried the ECLIP-explorer in galaxy, it need the license.
Thanks a lot
Hi, Wonderful pipeline! Would you like to share the Repeat element STAR index directory(human, hg38) to suip@uthscsa.edu? Thank you, Pinpin Sui
Hi,
I can't seem to find the human Repbase file required as input for hg19 (Repeat element STAR index). Can anyone help me find the download for this or instructions on how to get it?
Thanks, Valerie
Hi all, here you go. This is a quite old version from RepBase (prior to the current license agreement), but importantly contains rRNA sequences which are commonly necessary to filter out prior to genome mapping. For most other species, a repeat file containing similar rRNA sequences may suffice, or you can use a more up to date (subject to current license agreements) version of the RepBase file below.
Hi there,
I am a PH.D student from Xiamen university. That is a great job! I want to follow your eclip pipeline to do some analysis! But I don't have access to RepBase databse. Could you share your RepBase data (hg19,fasta) with me? I am very appreciated!
I am looking forward to hearing from you!
Best, Jessica