Closed FionaMoon closed 1 year ago
Inaddtation, I would like to view the difference between control/treatment group by IGV. I don't know which file should be the input of IGV. Is that ok to use the following files?
peakClusters.normed.compressed.bed input.NIL.r1.fq.genome-mappedSo.rmDupSo.r2.bam
Or I should use the bw files?
Treat_replicates_genome-mappedSo.rmDupSo.merged.r2.norm.neg.bw Control_input.NIL.r1.fq_genome-mappedSo.rmDupSo.merged.r2.norm.neg.bw
Hi eCLIP group, I've run the last step —— input normalization of eclip data. I finally get 3 files:
*peakClusters.normed.compressed.bed file like this:
I've find the colnames of *bed.full files in your documents:
However, I can't find discriptions about *peakClusters.normed.compressed.bed file.