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YeoLab / gscripts

General Use Scripts and Helper functions
MIT License
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Add a #!/usr/bin/env python line at the top to specifically call python #56

Closed olgabot closed 9 years ago

olgabot commented 9 years ago

There's some error going on:

ERROR 10:10:14,576 FunctionEdge - Contents of /oasis/tscc/scratch/jbrought/mirpipe2/analysis/v11_output/IC11.R07_L7_6.polyATrim.adapterTrim.groom.cel-lin-4-3p-star.fastq

.out:

/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/jbrought_custom/bin/miR_splitter.py: line 1: __author__: command not found

import: unable to open X server `' @ import.c/ImportImageCommand/359.

import: unable to open X server `' @ import.c/ImportImageCommand/359.

import: unable to open X server `' @ import.c/ImportImageCommand/359.

/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/jbrought_custom/bin/miR_splitter.py: line 7: syntax error near unexpected token `('

/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/jbrought_custom/bin/miR_splitter.py: line 7: `def construct_cutadapt_call(miRNA_seq, miRNA_id, fastq, output,

 **kwargs):'

I suspect it is because there was no #!/user/bin/env python at the top of the file, so the computer didn't realize it needs to use python.

olgabot commented 9 years ago

@broughtonjp and @mlovci can you weigh in?