Error during gscripts install

[shassathe]

After running git pull and setup.py install, I get the following error:

"Running clipper-0.2.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-E0fvqu/clipper-0.2.0/egg-dist-tmp-xYEn2w Traceback (most recent call last): File "setup.py", line 94, in zip_safe=False #True I think File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/install.py", line 67, in run File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/install.py", line 117, in do_egg_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 374, in run File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 604, in easy_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 655, in install_item File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 703, in process_distribution File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/init.py", line 797, in resolve File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/init.py", line 1047, in best_match File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/init.py", line 1059, in obtain File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 623, in easy_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 653, in install_item File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 838, in install_eggs File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 1066, in build_and_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 1052, in run_setup File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 238, in run_setup File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/contextlib.py", line 35, in exit self.gen.throw(type, value, traceback) File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 191, in setup_context File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/contextlib.py", line 35, in exit self.gen.throw(type, value, traceback) File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 162, in save_modules File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 137, in resume File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 150, in save_modules File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 191, in setup_context File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 235, in run_setup File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 265, in run File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 234, in runner File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 46, in _execfile File "/tmp/easy_install-E0fvqu/clipper-0.2.0/setup.py", line 5, in 'annotations/gencode_annotate_utrs_5p_3p.pl', ImportError: No module named Cython.Distutils"

[olgabot]

you need cython:

conda install cython

On Wed Feb 18 2015 at 1:10:42 PM Shashank Sathe notifications@github.com wrote:

After running git pull and setup.py install, I get the following error:

"Running clipper-0.2.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-E0fvqu/clipper-0.2.0/egg-dist-tmp-xYEn2w Traceback (most recent call last): File "setup.py", line 94, in zip_safe=False #True I think File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/core.py", line 151, in setup dist.run_commands() File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/dist.py", line 953, in run_commands self.run_command(cmd) File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/dist.py", line 972, in run_command cmd_obj.run() File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/install.py", line 67, in run File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/install.py", line 117, in do_egg_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 374, in run File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 604, in easy_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 655, in install_item File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 703, in process_distribution File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/ init.py", line 797, in resolve File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/ init.py", line 1047, in best_match File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/ init.py", line 1059, in obtain File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 623, in easy_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 653, in install_item File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 838, in install_eggs File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 1066, in build_and_install File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 1052, in run_setup File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 238, in run_setup File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/contextlib.py", line 35, in exit self.gen.throw(type, value, traceback) File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 191, in setup_context File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/contextlib.py", line 35, in exit self.gen.throw(type, value, traceback) File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 162, in save_modules File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 137, in resume File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 150, in save_modules File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 191, in setup_context File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 235, in run_setup File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 265, in run File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 234, in runner File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 46, in _execfile File "/tmp/easy_install-E0fvqu/clipper-0.2.0/setup.py", line 5, in 'annotations/gencode_annotate_utrs_5p_3p.pl', ImportError: No module named Cython.Distutils"

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