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YeoLab / gscripts

General Use Scripts and Helper functions
MIT License
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analyze_rna_seq.scala not able to complie QScript #75

Closed shassathe closed 8 years ago

shassathe commented 9 years ago 
INFO  11:32:09,197 QScriptManager - Compiling 1 QScript 
ERROR 11:32:12,047 QScriptManager - analyze_rna_seq.scala:244: too many arguments for constructor FastQC: ()org.broadinstitute.sting.queue.extensions.yeo.FastQC 
ERROR 11:32:12,057 QScriptManager -     add(new FastQC(filteredFastq)) 
ERROR 11:32:12,057 QScriptManager -         ^ 
ERROR 11:32:12,059 QScriptManager - analyze_rna_seq.scala:247: too many arguments for constructor FastQC: ()org.broadinstitute.sting.queue.extensions.yeo.FastQC 
ERROR 11:32:12,065 QScriptManager -       add(new FastQC(filteredPair)) 
ERROR 11:32:12,065 QScriptManager -           ^ 
ERROR 11:32:12,270 QScriptManager - analyze_rna_seq.scala:326: too many arguments for constructor FastQC: ()org.broadinstitute.sting.queue.extensions.yeo.FastQC 
ERROR 11:32:12,270 QScriptManager -             add(new FastQC(inFastq = fastqPair)) 
ERROR 11:32:12,271 QScriptManager -                 ^ 
ERROR 11:32:12,273 QScriptManager - analyze_rna_seq.scala:329: too many arguments for constructor FastQC: ()org.broadinstitute.sting.queue.extensions.yeo.FastQC 
ERROR 11:32:12,273 QScriptManager -           add(new FastQC(inFastq = fastqFile)) 
ERROR 11:32:12,274 QScriptManager -               ^ 
ERROR 11:32:12,707 QScriptManager - four errors found

Pipeline fails at the beginning, failing to compile the QScipt.