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YeoLab
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gscripts
General Use Scripts and Helper functions
MIT License
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rna_seq_scala fails at submit_miso_pipeline.py
#48
LeenMachine
closed
9 years ago
18
rna_seq_scala fail at calculate_NRF.py and oldsplice
#47
LeenMachine
closed
9 years ago
4
rna_seq_scala ERROR in count_tags
#46
LeenMachine
closed
9 years ago
3
rnaseq scala script (Gabe's pipeline) fails 12/4
#45
LeenMachine
closed
9 years ago
2
run_gently errors 12/4
#44
LeenMachine
opened
9 years ago
0
Fixing analyze_miRli.scala
#43
broughtonjp
closed
9 years ago
5
Added additional barcodes to construct_cutadapt_call to capture iCLIP events
#42
broughtonjp
closed
9 years ago
0
nice_install error while trying to install pybedtools
#41
boyko-
closed
9 years ago
6
fixed `concatenate_miso.py` to work with non-downsampled miso files.
#40
mlovci
closed
9 years ago
0
Mirli pipeline edits
#39
mlovci
closed
10 years ago
0
Miso ID helpers
#38
olgabot
closed
10 years ago
0
various fixes to miso submitter
#37
olgabot
closed
10 years ago
0
added structure/RNAbridges code
#36
mlovci
closed
10 years ago
0
Fixed submit_miso_pipeline.py
#35
olgabot
closed
10 years ago
0
Add downsample script
#34
olgabot
closed
10 years ago
0
miso pipeline fails to run
#33
gpratt
closed
10 years ago
4
Rewrote Submitter, added tests + sailfish quant and index
#32
olgabot
closed
10 years ago
0
Sailfish index + quant
#31
olgabot
closed
9 years ago
1
InPYranoid: InParanoid.pl, python style
#30
olgabot
opened
10 years ago
0
Add visible default arguments to qtools.Submitter
#29
olgabot
opened
10 years ago
0
qsub submitter fixes,
#28
olgabot
closed
10 years ago
0
Miso+submitter fixes
#27
olgabot
closed
10 years ago
0
Miso one touch
#26
olgabot
closed
10 years ago
0
SeqDB input format
#25
gpratt
opened
10 years ago
0
use survival function for p-values
#24
mlovci
opened
10 years ago
0
Barcode rename updates
#23
gpratt
closed
10 years ago
0
oldsplice updates
#22
mlovci
closed
10 years ago
0
testing extract_motifs from gscripts.miso.annotation
#21
olgabot
closed
10 years ago
0
Annotations.miso.extract_motifs
#20
olgabot
closed
10 years ago
0
fixed small barcoding bug
#19
gpratt
closed
10 years ago
0
Duplicate removal hotfix
#18
gpratt
closed
10 years ago
0
Scalable clip
#17
gpratt
closed
11 years ago
0
Rnaseq
#16
mlovci
closed
11 years ago
0
major fix to rnaseq.rpkmZ localZ score. Ranking wasn't implemented corre...
#15
mlovci
closed
11 years ago
0
Oldsplice now has SE exon trio RPK calculations
#14
mlovci
closed
11 years ago
0
Added skipped exon figure function function for dataviz
#13
olgabot
closed
11 years ago
0
Added a log_final_out function to parse all *.Log.final.out files from STAR in a directory
#12
olgabot
closed
11 years ago
0
Misoparser
#11
mlovci
closed
11 years ago
0
Olgabot
#10
mlovci
closed
11 years ago
0
Qtools
#9
mlovci
closed
11 years ago
0
Oldsplice
#8
mlovci
closed
11 years ago
0
I have an issue
#7
mlovci
closed
11 years ago
0
Oldsplice updates
#6
mlovci
closed
11 years ago
0
Array jobs in qtools. removed a version that i never finished.
#5
mlovci
closed
11 years ago
0
dataviz initial commits
#4
ppliu
closed
11 years ago
0
Made qtools more Pythonic and can now import Submitter via `from gscripts.qtools import Submitter`
#3
olgabot
closed
11 years ago
1
Merge from downstream...
#2
gpratt
closed
11 years ago
0
Last update of gpratt/gscripts, moving to yeolab
#1
gpratt
closed
11 years ago
0
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