In running outrigger psi or other command line programs, I get these errors:
/home/obotvinnik/workspace-git/outrigger/outrigger/commandline.py:937: DtypeWarning: Columns (18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,42,43,44,45,46,47,48,49,50,51) have mixed types. Specify dtype option on import or set low_memory=False.
cl = CommandLine(sys.argv[1:])
Since I expect most users of outrigger to use it on a large dataset, on a supercomputer, this PR sets low_memory=False by default, but can be turned off with the command line flag --low-memory
[x] The pull request should include tests.
[x] If the pull request adds functionality, the docs should be updated. Put
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[x] The pull request should work for Python 2.7, 3.4, and 3.5.
In running
outrigger psi
or other command line programs, I get these errors:Since I expect most users of
outrigger
to use it on a large dataset, on a supercomputer, this PR setslow_memory=False
by default, but can be turned off with the command line flag--low-memory