Add co-splicing metric for retained introns

YeoLab / outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

http://yeolab.github.io/outrigger/

BSD 3-Clause "New" or "Revised" License

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Add co-splicing metric for retained introns #62

Open olgabot opened 8 years ago

olgabot commented 8 years ago

Since retained introns can't be measured by junctions alone, use the exon-intron boundary reads in addition to the junctions to measure the co-incidence of splicing. I saw this equation in some paper somewhere and now I can't find it. I swear it was called "co-incidence of splicing metric" but that doesn't turn up anything useful in Google (vanilla) or Google Scholar.