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YeoLab / outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
http://yeolab.github.io/outrigger/
BSD 3-Clause "New" or "Revised" License
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outrigger index is dying #80

Closed ecwheele closed 7 years ago

ecwheele commented 7 years ago

outrigger index errored out. Command and error included in the gist below:

https://gist.github.com/ecwheele/cb3adc63d13bfddb0eaa0c1dc889fc47

olgabot commented 7 years ago

Hmm, did you start an outrigger index command and then cancel or exit it?

olgabot commented 7 years ago

I think I know what's happening here - the old outrigger index command added exons to the gffutils database in ./outrigger_output/index/gtf/gencode.v19.annotation.gtf.db and is now running into the same exons and is trying to add them, but they already exist.

olgabot commented 7 years ago

Duplicate of https://github.com/YeoLab/outrigger/issues/69