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YeoLab / outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
http://yeolab.github.io/outrigger/
BSD 3-Clause "New" or "Revised" License
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How to set the "--n-jobs" parameter? #91

Closed ttchuanbao closed 6 years ago

ttchuanbao commented 6 years ago

I am using outrigger 1.1.1 on Ubuntu 16.04.3 LTS. I find the parameter of "--n-jobs" to define Number of threads to use when parallelizing exon finding. And the default value "-l" means "to use as many threads as are available". But how to set this parameter? I tried to use as outrigger index -j sj_file/*SJ.out.tab -g /XXX/XXX.gtf --n-jobs 4 or outrigger index -j sj_file/*SJ.out.tab -g /XXX/XXX.gtf --n-jobs -4 But it seemed that outigger still used as many threads as possible (not 4 only). Could you please tell me how to set this parameter? Thanks.