YeoLab / outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
http://yeolab.github.io/outrigger/
BSD 3-Clause "New" or "Revised" License
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Unstacked DataFrame is too big, causing int32 overflow #95

Open Qi-Yang-Bioinfo opened 4 years ago

Qi-Yang-Bioinfo commented 4 years ago

Hi, I'm having trouble processing a large dataset(3000+ cells with Smartseq2),

Description

When I'm running Outrigger PSI ,there is a stackoverflow. Any work around? please.

Versions

outrigger 1.1.1 on ubuntu19.10

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