Errors when empty reproducible windows file is used as input to consult_term_reference.R

Skipper fails to finish with one bad sample (eg. no reproducible windows were found). Could there be a check here to skip this rule?
Rscript --vanilla \
skipper/tools/consult_term_reference.R \
output/reproducible_enriched_windows/RBP_CELL.reproducible_enriched_windows.tsv.gz \
skipper/annotations/c5.go.v7.5.1.symbols.gmt skipper/annotations/encode3_go_terms.reference.tsv.gz \
skipper/annotations/encode3_go_terms.jaccard_index.rds RBP_CELL

── Attaching packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.3.6      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()
Loading required package: viridisLite
Rows: 0 Columns: 20
── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Delimiter: "\t"
chr (20): chr, start, end, name, score, strand, gc, gc_bin, chrom, feature_i...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 5067 Columns: 3
── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Delimiter: "\t"
chr (1): term
dbl (2): n_term_windows, f_term_windows

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Error in `summarize()`:
! Problem while computing `..1 = ... %>% as_tibble`.
Caused by error in `names(df) <- repaired_names(c(names2(dimnames(x)), n), repair_hint = TRUE,
  .name_repair = .name_repair)`:
! 'names' attribute [2] must be the same length as the vector [1]
Backtrace:
     ▆
  1. ├─... %>% rename(n_windows_enriched = n)
  2. ├─dplyr::rename(., n_windows_enriched = n)
  3. ├─dplyr::summarize(...)
  4. ├─dplyr:::summarise.data.frame(...)
  5. │ └─dplyr:::summarise_cols(.data, dplyr_quosures(...), caller_env = caller_env())
  6. │   ├─base::withCallingHandlers(...)
  7. │   └─dplyr:::map(quosures, summarise_eval_one, mask = mask)
  8. │     └─base::lapply(.x, .f, ...)
  9. │       └─dplyr (local) FUN(X[[i]], ...)
 10. │         └─mask$eval_all_summarise(quo)
 11. ├─... %>% as_tibble
 12. ├─tibble::as_tibble(.)
 13. ├─tibble:::as_tibble.table(.)
 14. └─base::.handleSimpleError(...)
 15.   └─dplyr (local) h(simpleError(msg, call))
 16.     └─rlang::abort(bullets, call = error_call, parent = skip_internal_condition(e))
Execution halted
-rw-r--r-- 1 bay001 yeo-group 113 Jun  7 22:41 output/reproducible_enriched_windows/RBP_CELL.reproducible_enriched_windows.tsv.gz
[bay001@tscc-1-4 processing]$ zcat output/reproducible_enriched_windows/RBP_CELL.reproducible_enriched_windows.tsv.gz
chr     start   end     name    score   strand  gc      gc_bin  chrom   feature_id      feature_bin     feature_type_top        feature_types   gene_name       gene_id transcript_ids  gene_type_top   transcript_type_top      gene_types      transcript_types
YeoLab / skipper

Errors when empty reproducible windows file is used as input to consult_term_reference.R #8
