search

YerevaNN / BARTSmiles

BARTSmiles, generative masked language model for molecular representations
MIT License
31 stars 4 forks source link

Install questions #5

Closed PatWalters closed 1 year ago

PatWalters commented 1 year ago

There are a few things that are unclear in the installation instructions.

  1. README.md says Setup a conda environment: conda create --name --file examples/requirements.txt

Where is this requirements.txt? I don't see anywhere in the repo

  1. Is Fairseq supposed to be installed under the root directory or the BARTsmiles directory?
  2. The "Finetuning on MoleculeNet tasks section refers to "python process/process_datasets.py". Should this be "python preprocess/process_datasets.py"?

It would be helpful to see which directory each package should be installed into.

Thanks for your help with this.

kosonocky commented 1 year ago

Yeah there is no environment.yml file to make the conda environment...

@gayanechilingar

gayanechilingar commented 1 year ago

Thank you for the questions and corrections.

  1. I added the environment.yml file and changed the setup instructions in the README file.
  2. Both BARTSmiles and Fairseq must be cloned into the root directory.
  3. Yes, It should be "python preprocess/process_datasets.py".
PatWalters commented 1 year ago

Thank you

On Fri, Dec 9, 2022 at 2:26 PM gayanechilingar @.***> wrote:

Closed #5 https://github.com/YerevaNN/BARTSmiles/issues/5 as completed.

— Reply to this email directly, view it on GitHub https://github.com/YerevaNN/BARTSmiles/issues/5#event-7998718206, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAVCVTK2G5WB4CPTHZYHXELWMMXP5ANCNFSM6AAAAAASTVXEJM . You are receiving this because you authored the thread.Message ID: @.***>