Install fails in R 4.1 - Githubissues

The installation appears to fail due to DESeq no longer being available post R 3.6. See error message below.

Is there any way to remove the DESeq dependency so that this package can function with DESeq2 in R 4.1?

The downloaded source packages are in ‘/private/var/folders/h5/t4j9ydm55gs80xw373bq4__r0000gn/T/RtmpL6s2Hb/downloaded_packages’ checking for file ‘/private/var/folders/h5/t4j9ydm55gs80xw373bq4r0000gn/T/RtmpL6s2Hb/remotes15cce28e65d40/YevhenAkimov-DEBRA-89111✔ checking for file ‘/private/var/folders/h5/t4j9ydm55gs80xw373bq4r0000gn/T/RtmpL6s2Hb/remotes15cce28e65d40/YevhenAkimov-DEBRA-89111ab/DESCRIPTION’ ─ preparing ‘DEBRA’: ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘DEBRA_0.0.0.9000.tar.gz’

ERROR: dependency ‘DESeq’ is not available for package ‘DEBRA’

removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/DEBRA’ Warning messages: 1: package ‘DESeq’ is not available for this version of R

A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages 2: In i.p(...) : installation of package ‘/var/folders/h5/t4j9ydm55gs80xw373bq4__r0000gn/T//RtmpL6s2Hb/file15cce33129a6e/DEBRA_0.0.0.9000.tar.gz’ had non-zero exit status

library(DEBRA) Error in library(DEBRA) : there is no package called ‘DEBRA’

YevhenAkimov / DEBRA

Install fails in R 4.1 #3