search

YiPeng-Gao / scDaPars

Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
10 stars 1 forks source link

the number of genes #15

Open Learnbio2021 opened 3 years ago

Learnbio2021 commented 3 years ago

Use 50G bam file to run DaPars software, the result file contains more than 10,000 genes. Split the 50G bam file into single cell bam files according to the barcode, and run DaPars software. The DaPars result file contains hundreds of genes. Excuse me, after the bam file is split into a single cell bam file according to the barcode, do I need to modify some parameters? Can you give advice on reducing the number of genes so much?

yangfeizZZ commented 2 years ago

would you tell me your E-mail or QQ number？I do it now. we can communicate each other .

YiPeng-Gao commented 2 years ago

files

you can edit the cutoff in DaPars configure files to include more genes.