Closed BenxiaHu closed 3 years ago
Hello, when I try to run scDaPars on one public scRNA-seq, I reaslized that I need to provide the cell type information. scDaPars.res.umap = umap(t(scDaPars.res)) scDaPars.res.umap.data = data.frame(scDaPars.res.umap$layout) colnames(scDaPars.res.umap.data) = c("Dim1", "Dim2") scDaPars.res.umap.data$cellType = cell_type$source_name
My question is that scDaPars can identify cell clusters, not depends known cell typ information?
The cell type information is used as ground truth to evaluate if the clustering result is correct. The clustering itself does not require any prior cell type information.
great.
Hello, when I try to run scDaPars on one public scRNA-seq, I reaslized that I need to provide the cell type information. scDaPars.res.umap = umap(t(scDaPars.res)) scDaPars.res.umap.data = data.frame(scDaPars.res.umap$layout) colnames(scDaPars.res.umap.data) = c("Dim1", "Dim2") scDaPars.res.umap.data$cellType = cell_type$source_name
My question is that scDaPars can identify cell clusters, not depends known cell typ information?