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Yikun / BBS

The Bioconductor Build System
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lfa.install #12

Open Yikun opened 1 year ago

Yikun commented 1 year ago 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL lfa
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘lfa’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c fastmat.c -o fastmat.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/include/R.h:78,
                 from lfa.h:4,
                 from fastmat.c:1:
fastmat.c: In function ‘mv’:
fastmat.c:22:14: error: too few arguments to function ‘dgemv_’
   22 |     F77_CALL(dgemv)(&tr,dimA,dimA+1,&alpha,A,dimA,v,&one,&zero,ret,&one);
      |              ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:10: note: declared here
  107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
      |          ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:1: note: in expansion of macro ‘F77_NAME’
  107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
      | ^~~~~~~~
fastmat.c: In function ‘tmv’:
fastmat.c:48:14: error: too few arguments to function ‘dgemv_’
   48 |     F77_CALL(dgemv)(&tr,dimA,dimA+1,&alpha,A,dimA,v,&one,&zero,ret,&one);
      |              ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:10: note: declared here
  107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
      |          ^~~~~
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/RS.h:77:25: note: in definition of macro ‘F77_CALL’
   77 | # define F77_CALL(x)    x ## _
      |                         ^
/home/biocbuild/bbs-3.17-bioc/R/include/R_ext/BLAS.h:107:1: note: in expansion of macro ‘F77_NAME’
  107 | F77_NAME(dgemv)(const char *trans, const int *m, const int *n,
      | ^~~~~~~~
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: fastmat.o] Error 1
ERROR: compilation failed for package ‘lfa’
* removing ‘/home/biocbuild/bbs-3.17-bioc/R/library/lfa’
martin-g commented 1 year ago

fails the same on x86_64 - https://bioconductor.org/checkResults/3.17/bioc-LATEST/lfa/nebbiolo1-install.html

Yikun commented 1 year ago

The error also same with https://github.com/Yikun/BBS/issues/10