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Yikun / BBS

The Bioconductor Build System
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Rbwa.install #20

Closed Yikun closed 1 year ago

Yikun commented 1 year ago 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL Rbwa
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘Rbwa’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -Wall -O2 -c utils.c -o utils.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -Wall -O2 -c kthread.c -o kthread.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -Wall -O2 -c kstring.c -o kstring.o
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -Wall -O2 -c ksw.c -o ksw.o
ksw.c:29:10: fatal error: emmintrin.h: No such file or directory
   29 | #include <emmintrin.h>
      |          ^~~~~~~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: ksw.o] Error 1
ERROR: compilation failed for package ‘Rbwa’
* removing ‘/home/biocbuild/bbs-3.17-bioc/R/library/Rbwa’
Yikun commented 1 year ago

https://github.com/crisprVerse/Rbwa/issues/1

martin-g commented 1 year ago

Proposed a Pull Request: https://github.com/crisprVerse/Rbwa/pull/2

martin-g commented 1 year ago

The report from 23.03.2023 is OK, with 2 warnings.