Closed Yikun closed 1 year ago
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maftools ### ############################################################################## ############################################################################## * checking for file ‘maftools/DESCRIPTION’ ... OK * preparing ‘maftools’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cancer_hotspots.Rmd’ using rmarkdown --- finished re-building ‘cancer_hotspots.Rmd’ --- re-building ‘cnv_analysis.Rmd’ using rmarkdown Could not fetch https://user-images.githubusercontent.com/8164062/160853684-85021668-a515-4e3d-8ccb-dddf992098d9.png HttpExceptionRequest Request { host = "user-images.githubusercontent.com" port = 443 secure = True requestHeaders = [] path = "/8164062/160853684-85021668-a515-4e3d-8ccb-dddf992098d9.png" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 } ResponseTimeout Error: processing vignette 'cnv_analysis.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building ‘cnv_analysis.Rmd’ --- re-building ‘maftools.Rmd’ using rmarkdown Warning in doTryCatch(return(expr), name, parentenv, handler) : "axes" is not a graphical parameter Warning in doTryCatch(return(expr), name, parentenv, handler) : "axes" is not a graphical parameter Warning in doTryCatch(return(expr), name, parentenv, handler) : "axes" is not a graphical parameter --- finished re-building ‘maftools.Rmd’ --- re-building ‘oncoplots.Rmd’ using rmarkdown --- finished re-building ‘oncoplots.Rmd’ SUMMARY: processing the following file failed: ‘cnv_analysis.Rmd’ Error: Vignette re-building failed. Execution halted
https://bioconductor.org/checkResults/3.18/bioc-LATEST/maftools/ build fine! There are warnings in check
check