CopywriteR.build

[Yikun]

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CopywriteR
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* checking for file ‘CopywriteR/DESCRIPTION’ ... OK
* preparing ‘CopywriteR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CopywriteR.Rnw’ using Sweave
Loading required package: BiocParallel
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  pseudoinverse used at 0.979
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  neighborhood radius 0.001
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  reciprocal condition number  0
Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric,  :
  There are other near singularities as well. 1e-06

Error: processing vignette 'CopywriteR.Rnw' failed with diagnostics:
 chunk 10 (label = CopywriteR) 
Error in value[[3L]](cond) : 
  The GC-content and mappability normalization did not work due to a
  failure to calculate loesses. This can generally be solved by using
  larger bin sizes. Stopping execution of the remaining part of the
  script...

--- failed re-building ‘CopywriteR.Rnw’

SUMMARY: processing the following file failed:
  ‘CopywriteR.Rnw’

Error: Vignette re-building failed.
Execution halted

[martin-g]

Fails the same way on x86_64 - https://bioconductor.org/checkResults/3.17/bioc-LATEST/CopywriteR/nebbiolo1-buildsrc.html

[martin-g]

Package CopywriteR has been deprecated in 3.17 and removed in 3.18