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Yikun / BBS

The Bioconductor Build System
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gapgom.build #49

Closed Yikun closed 11 months ago

Yikun commented 1 year ago 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GAPGOM
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* checking for file ‘GAPGOM/DESCRIPTION’ ... OK
* preparing ‘GAPGOM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GAPGOM.Rmd’ using rmarkdown
Quitting from lines 130-142 (GAPGOM.Rmd) 
Error: processing vignette 'GAPGOM.Rmd' failed with diagnostics:
could not find function "ExpressionSet"
--- failed re-building ‘GAPGOM.Rmd’

--- re-building ‘benchmarks.Rmd’ using rmarkdown
--- finished re-building ‘benchmarks.Rmd’

SUMMARY: processing the following file failed:
  ‘GAPGOM.Rmd’

Error: Vignette re-building failed.
Execution halted
martin-g commented 1 year ago

Same failure on x86_64: https://bioconductor.org/checkResults/3.17/bioc-LATEST/GAPGOM/nebbiolo1-buildsrc.html

martin-g commented 11 months ago

The package has been deprecated in 3.17 and removed for 3.18