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Yikun / BBS

The Bioconductor Build System
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metaseqR2.build #56

Open Yikun opened 1 year ago

Yikun commented 1 year ago

https://yikun.github.io/bioconductor-0301/report/metaseqR2/kunpeng1-buildsrc.html

martin-g commented 1 year ago

The error is: sh: 1: /tmp/Rtmp5jSbBD/test_custom/genePredToGtf: Exec format error

martin-g commented 1 year ago

I've asked for aarch64 binary at https://groups.google.com/a/soe.ucsc.edu/g/genome/c/_wx0SJPBXok?hl=en

The Github repo is https://github.com/ucscGenomeBrowser/kent

martin-g commented 1 year ago

Reported upstream - https://github.com/ucscGenomeBrowser/kent/issues/75

martin-g commented 1 year ago

The problem with genePredToGtf has been solved by building it locally and setting it in the classpath - https://github.com/pmoulos/metaseqR2/pull/16 The build and checks fully pass when executed manually but timeout when executed with the daily report.