Open Yikun opened 1 year ago
https://yikun.github.io/bioconductor-0301/report/CancerInSilico/kunpeng1-install.html
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CancerInSilico ### ############################################################################## ############################################################################## * checking for file ‘CancerInSilico/DESCRIPTION’ ... OK * preparing ‘CancerInSilico’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘CancerInSilico’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RunModel.cpp -o RunModel.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-runner.cpp -o test-runner.o In file included from /usr/include/signal.h:328, from Tests/catch.h:2070, from test-runner.cpp:2: Tests/catch.h:6473:33: error: size of array ‘altStackMem’ is not an integral constant-expression 6473 | static char altStackMem[SIGSTKSZ]; | ^~~~~~~~ Tests/catch.h:6524:45: error: size of array ‘altStackMem’ is not an integral constant-expression 6524 | char FatalConditionHandler::altStackMem[SIGSTKSZ] = {}; | ^~~~~~~~ make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:198: test-runner.o] Error 1 ERROR: compilation failed for package ‘CancerInSilico’ * removing ‘/tmp/RtmpvNvY5E/Rinst14289620be0e1d/CancerInSilico’ ----------------------------------- ERROR: package installation failed
Fails the same on x86_64 - https://bioconductor.org/checkResults/3.17/bioc-LATEST/CancerInSilico/nebbiolo1-buildsrc.html
https://yikun.github.io/bioconductor-0301/report/CancerInSilico/kunpeng1-install.html