Yikun / BBS

The Bioconductor Build System
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cancerinsilico.install #58

Open Yikun opened 1 year ago

Yikun commented 1 year ago

https://yikun.github.io/bioconductor-0301/report/CancerInSilico/kunpeng1-install.html

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CancerInSilico
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* checking for file ‘CancerInSilico/DESCRIPTION’ ... OK
* preparing ‘CancerInSilico’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
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* installing *source* package ‘CancerInSilico’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c RunModel.cpp -o RunModel.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c test-runner.cpp -o test-runner.o
In file included from /usr/include/signal.h:328,
                 from Tests/catch.h:2070,
                 from test-runner.cpp:2:
Tests/catch.h:6473:33: error: size of array ‘altStackMem’ is not an integral constant-expression
 6473 |         static char altStackMem[SIGSTKSZ];
      |                                 ^~~~~~~~
Tests/catch.h:6524:45: error: size of array ‘altStackMem’ is not an integral constant-expression
 6524 |     char FatalConditionHandler::altStackMem[SIGSTKSZ] = {};
      |                                             ^~~~~~~~
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:198: test-runner.o] Error 1
ERROR: compilation failed for package ‘CancerInSilico’
* removing ‘/tmp/RtmpvNvY5E/Rinst14289620be0e1d/CancerInSilico’
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ERROR: package installation failed
martin-g commented 1 year ago

Fails the same on x86_64 - https://bioconductor.org/checkResults/3.17/bioc-LATEST/CancerInSilico/nebbiolo1-buildsrc.html