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Yikun / BBS

The Bioconductor Build System
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TileDBArray.build #59

Open martin-g opened 1 year ago

martin-g commented 1 year ago

https://yikun.github.io/bioconductor-0301/report/TileDBArray/kunpeng1-buildsrc.html

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TileDBArray
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* checking for file ‘TileDBArray/DESCRIPTION’ ... OK
* preparing ‘TileDBArray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘userguide.Rmd’ using rmarkdown
Quitting from lines 35-38 (userguide.Rmd) 
Error: processing vignette 'userguide.Rmd' failed with diagnostics:
Expecting an external pointer: [type=NULL].
--- failed re-building ‘userguide.Rmd’

SUMMARY: processing the following file failed:
  ‘userguide.Rmd’

Error: Vignette re-building failed.
Execution halted
martin-g commented 1 year ago

Reported upstream with: https://github.com/LTLA/TileDBArray/issues/25

martin-g commented 11 months ago

There is no TileDB OS package in openEuler 22.03 LTS, so I built it from source, then installed the R-package for tiledb and finally R CMD ... TileDBArray. The next report must pass!